I'm missing all the usual processing tools in the Vector menu in QGIS 2.16 (eg vector overlay, analysis, etc). They do appear in the processing toolbox but there's no sign of them in the Vector menu. Has anyone come across this issue?
Answer
I had the same issue, first thought it was intentional, but discovered if you delete the .qgis2 directory from user account this fixes the problem. See https://hub.qgis.org/issues/15265
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